EXPLORATION OF THE GOLD NANOPARTICLES–DNA INTERACTION: A NOVEL APPROACH TOWARDS RAPID CANCER DIAGNOSIS
Main Article Content
Keywords
DNA Interaction, Cancer Diagnosis, Nanotechnology
Abstract
Unique optical, physical, and biological characteristics of gold nanoparticles make them suitable for use in medicine, particularly in the detection of cancer. This study synthesized spherical monodispersed gold nanoparticles (AuNPs) by extending a little from established Turkevich, Frens via varying the concentration of HAuCl4/Citrate ratios. These freshly synthesized red color AuNPs are further characterized for size, size distribution, shape and monodispersity by UV/Vis spectrophotometer, DLS, TEM and AFM studies. Next genomic DNA was extracted from cancer and normal individuals’ blood samples by standard protocol and is further characterized by Nano Drop spectrophotometer. It was hypothesized that DNA has diverse tendencies to get adsorb onto AuNPs surface in colloidal solution form. Using this observation, we had planned this novel project based on color variations related to interaction of 40nm citrate capped AuNPs conjugated to non-functionalized genomic DNA both from cancer and normal samples. SPR peak stability vs SPR shift towards longer wavelength upon salt addition has been studied thoroughly, so this novel spectroscopic technique analyzed sample data set (both cancer and normal genomic DNA) adsorption and it was observed to show parabolic trend with SPR peak stability at 536nm in almost all Breast cancer samples where solution color remained red upon salt addition, so this led the basis of cancer detection, while healthy samples showed broadened SPR peak with diminished absorption values at SPR peak showing particle aggregation visible to eye as blue/grey color. Analysis results obtained from colorimetry and UV/Vis spectroscopy for monodisperse to polydisperse AuNPs colloidal solution expose that bigger AuNPs, that make the major volume of the solution, could overshadow the presence of smaller ones and maybe we need higher concentration of DNA to stabilize these AuNPs against aggregation upon salt addition.
References
2. V. Klimov, "Surface Plasmons," Nanoplasmonics 63–90 (2014).
3. F. Xia, X. Zuo, R. Yang, Y. Xiao, D. Kang, A. Vallée-Bélisle, X. Gong, J. D. Yuen, B. B. Y. Hsu, A. J. Heeger, and K. W. Plaxco, "Colorimetric detection of DNA, small molecules, proteins, and ions using unmodified gold nanoparticles and conjugated polyelectrolytes," Proc. Natl. Acad. Sci. U. S. A. 107(24), 10837–10841 (2010).
4. C. C. Chang, C. P. Chen, T. H. Wu, C. H. Yang, C. W. Lin, and C. Y. Chen, "Gold nanoparticle-based colorimetric strategies for chemical and biological sensing applications," Nanomaterials 9(6), 1–24 (2019).
5. L. De Sio, R. Caputo, U. Cataldi, and C. Umeton, "Broad band tuning of the plasmonic resonance of gold nanoparticles hosted in self-organized soft materials," J. Mater. Chem. 21(47), 18967–18970 (2011).
6. H. Li and L. J. Rothberg, "Label-free colorimetric detection of specific sequences in genomic DNA amplified by the polymerase chain reaction," J. Am. Chem. Soc. 126(35), 10958–10961 (2004).
7. H. Li and L. Rothberg, "Colorimetric detection of DNA sequences based on electrostatic interactions with unmodified gold nanoparticles," Proc. Natl. Acad. Sci. U. S. A. 101(39), 14036–14039 (2004).
8. K. M. Koo, A. A. I. Sina, L. G. Carrascosa, M. J. A. Shiddiky, and M. Trau, "DNA-bare gold affinity interactions: Mechanism and applications in biosensing," Anal. Methods 7(17), 7042–7054 (2015).
9. K. Sato, K. Hosokawa, and M. Maeda, "Rapid aggregation of gold nanoparticles induced by non-cross-linking DNA hybridization," J. Am. Chem. Soc. 125(27), 8102–8103 (2003).
10. Y. Liu, N. Zhang, P. Li, L. Yu, S. Chen, Y. Zhang, Z. Jing, and W. Peng, "Low-cost localized surface plasmon resonance biosensing platform with a response enhancement for protein detection," Nanomaterials 9(7), (2019).
11. I.-I. S. Lim, L. Wang, U. Chandrachud, S. Gal, and C.-J. Zhong, "Assembly/Disassembly of DNA-Au Nanoparticles: A Strategy of Intervention," Res. Lett. Nanotechnol. 2008, 1–4 (2008).
12. K. Rahme, J. D. Holmes, K. Rahme, J. D. Holmes, G. Nanoparticles, K. Rahme, and J. D. Holmes, "Dekker Encyclopedia of Nanoscience and Nanotechnology , Third Edition Gold Nanoparticles : Synthesis , Characterization , and Bioconjugation Gold Nanoparticles : Synthesis , Characterization , and Bioconjugation," (September), (2015).
13. Y. Liu, M. K. Shipton, J. Ryan, E. D. Kaufman, S. Franzen, and D. L. Feldheim, "Synthesis, stability, and cellular internalization of gold nanoparticles containing mixed peptide-poly(ethylene glycol) monolayers," Anal. Chem. 79(6), 2221–2229 (2007).
14. K. Chen, M. Zhang, Y. N. Chang, L. Xia, W. Gu, Y. Qin, J. Li, S. Cui, and G. Xing, "Utilizing Gold Nanoparticle Probes to Visually Detect DNA Methylation," Nanoscale Res. Lett. 11(1), (2016).
15. A. A. I. Sina, L. G. Carrascosa, Z. Liang, Y. S. Grewal, A. Wardiana, M. J. A. Shiddiky, R. A. Gardiner, H. Samaratunga, M. K. Gandhi, R. J. Scott, D. Korbie, and M. Trau, "Epigenetically reprogrammed methylation landscape drives the DNA self-assembly and serves as a universal cancer biomarker," Nat. Commun. 9(1), 1–13 (2018).
16. J. Dong, P. L. Carpinone, G. Pyrgiotakis, P. Demokritou, and B. M. Moudgil, "Synthesis of precision gold nanoparticles using Turkevich method," KONA Powder Part. J. 37(August), 224–232 (2020).
17. C. Nanostructures, "Materials 2015 , 8 , 2849-2862;," 2849–2862 (2015).
18. M. Iqbal, G. Usanase, K. Oulmi, F. Aberkane, T. Bendaikha, H. Fessi, N. Zine, G. Agusti, E. S. Errachid, and A. Elaissari, "Preparation of gold nanoparticles and determination of their particles size via different methods," Mater. Res. Bull. 79, 97–104 (2016).
19. H. Zakaria, W. S. Abdelaziz, and T. Youssef, "Effect of size, concentration, and type of spherical gold nanoparticles on heat evolution following laser irradiation using tissue-simulating phantoms," Lasers Med. Sci. 31(4), 625–634 (2016).
20. V. Mody, R. Siwale, A. Singh, and H. Mody, "Introduction to metallic nanoparticles," J. Pharm. Bioallied Sci. 2(4), 282 (2010).
21. J. Huang, Y. L. Liou, Y. N. Kang, Z. R. Tan, M. J. Peng, and H. H. Zhou, "Real-time colorimetric detection of DNA methylation of the PAX1 gene in cervical scrapings for cervical cancer screening with thiol-labeled PCR primers and gold nanoparticles," Int. J. Nanomedicine 11, 5335–5347 (2016).
22. B. Nikoobakht, Z. L. Wang, and M. A. El-Sayed, "Self-assembly of gold nanorods," J. Phys. Chem. B 104(36), 8635–8640 (2000).
23. S. Rahman, "Size and Concentration Analysis of Gold Nanoparticles With Ultraviolet-Visible Spectroscopy," Undergrad. J. Math. Model. One + Two 7(1), (2016).
24. K. Saha, S. S. Agasti, C. Kim, X. Li, and V. M. Rotello, "Gold nanoparticles in chemical and biological sensing," Chem. Rev. 112(5), 2739–2779 (2012).
25. J. Ou, Z. Zhou, Z. Chen, and H. Tan, "Optical diagnostic based on functionalized gold nanoparticles," Int. J. Mol. Sci. 20(18), (2019).
26. P. N. Colloids, E. Tomaszewska, K. Soliwoda, K. Kadziola, B. Tkacz-szczesna, G. Celichowski, M. Cichomski, W. Szmaja, and J. Grobelny, "Detection Limits of DLS and UV-Vis Spectroscopy in Characterization of Detection Limits of DLS and UV-Vis Spectroscopy in Characterization of Polydisperse Nanoparticles Colloids," (February 2014), (2013).