EXPLORING THE CRITICAL ROLES OF EPIGENETICS IN CROP ADAPTATION AND RESILIENCE IN STRESS AND CLIMATE CHANGE
Main Article Content
Keywords
Crop, Epigenetics, DNA Methylation, Climate Change
Abstract
Food security has emerged as significant threats to humanity that need to be addressed and demand for new approaches for crop improvement, adaptation, and resilience such as epigenetic regulation. Plants are able to adjust to altering environmental situations because epigenetic processes, including DNA methylation, histone modifications, and non-coding RNA control, can affect and modulate gene expression by responding to environmental stimuli. Plants use epigenetic control as a critical mechanism for stress response and adaptation to climate change. This review paper has investigated the recent advancement and association between epigenetics and crop resilience, exploring the critical role of epigenetic modifications in stress adaptation, tolerance, and phenotypic plasticity. By understanding the role of epigenetics on crop adaptation and resilience, more sustainable and productive agricultural systems can be created to overcome worldwide food security. Future research in this field will continue to reveal the insightful and valuable complexities of epigenetic regulation and its potential applications in crop improvement and resilience and this will pave the way for the exploitation of epigenetic variation in crop productivity and breeding.
References
2. M. Chiliński, K. Sengupta, and D. Plewczynski, "From DNA human sequence to the chromatin higher order organisation and its biological meaning: using biomolecular interaction networks to understand the influence of structural variation on spatial genome organisation and its functional effect," in Seminars in cell & developmental biology, 2022, vol. 121: Elsevier, pp. 171-185.
3. A. Hafner and A. Boettiger, "The spatial organization of transcriptional control," Nature Reviews Genetics, vol. 24, no. 1, pp. 53-68, 2023.
4. S. Feng, Z. Zhong, M. Wang, and S. E. Jacobsen, "Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing," Epigenetics & chromatin, vol. 13, pp. 1-17, 2020.
5. M. Yue et al., "Histone acetylation of 45S rDNA correlates with disrupted nucleolar organization during heat stress response in Zea mays L," Physiologia Plantarum, vol. 172, no. 4, pp. 2079-2089, 2021.
6. I. Khan, S. Khan, M. Akhoundian, D. Shah, S. S. Shah, and S. A. Jan, "Biogenesis of Non-coding RNAs (ncRNAs) and Their Biological Role in Rice (Oryza sativa L.)," Plant Molecular Biology Reporter, vol. 41, no. 3, pp. 333-344, 2023.
7. S. Fan, H. Liu, J. Liu, W. Hua, S. Xu, and J. Li, "Systematic analysis of the DNA methylase and demethylase gene families in rapeseed (Brassica napus L.) and their expression variations after salt and heat stresses," International Journal of Molecular Sciences, vol. 21, no. 3, p. 953, 2020.
8. S. Chen et al., "From non-coding RNAs to histone modification: The epigenetic mechanisms in tomato fruit ripening and quality regulation," Plant Physiology and Biochemistry, p. 109070, 2024.
9. L. Sun et al., "Maintenance of grafting reducing cadmium accumulation in soybean (Glycine max) is mediated by DNA methylation," Science of The Total Environment, vol. 847, p. 157488, 2022.
10. N. Li et al., "Identification of long non-coding RNA-microRNA-mRNA regulatory modules and their potential roles in drought stress response in wheat (Triticum aestivum L.)," Frontiers in Plant Science, vol. 13, p. 1011064, 2022.
11. O. F. Nunez-Martinez, L. M. Jones, and K. Bräutigam, "Epigenetic Regulation of Genome Function in Populus," in The Poplar Genome: Springer, 2024, pp. 43-56.
12. A. G. Ince and M. Karaca, "Tissue and/or developmental stage specific methylation of nrDNA in Capsicum annuum," Journal of plant research, vol. 134, no. 4, pp. 841-855, 2021.
13. S. S. Dey et al., "Genome wide identification of lncRNAs and circRNAs having regulatory role in fruit shelf life in health crop cucumber (Cucumis sativus L.)," Frontiers in Plant Science, vol. 13, p. 884476, 2022.
14. J. J. Gallo-Franco, C. C. Sosa, T. Ghneim-Herrera, and M. Quimbaya, "Epigenetic control of plant response to heavy metal stress: a new view on aluminum tolerance," Frontiers in plant science, vol. 11, p. 602625, 2020.
15. J. Zeng et al., "Nitric oxide controls shoot meristem activity via regulation of DNA methylation," Nature Communications, vol. 14, no. 1, p. 8001, 2023.
16. M. Zhou, A. Riva, M.-P. L. Gauthier, M. P. Kladde, R. J. Ferl, and A.-L. Paul, "Single-molecule long-read methylation profiling reveals regional DNA methylation regulated by Elongator Complex Subunit 2 in Arabidopsis roots experiencing spaceflight," Biology Direct, vol. 19, no. 1, p. 33, 2024.
17. J. Jiang et al., "UVR8 interacts with de novo DNA methyltransferase and suppresses DNA methylation in Arabidopsis," Nature plants, vol. 7, no. 2, pp. 184-197, 2021.
18. H. Zhang and J.-K. Zhu, "Epigenetic gene regulation in plants and its potential applications in crop improvement," Nature Reviews Molecular Cell Biology, pp. 1-17, 2024.
19. E. R. Konzen et al., "Molecular markers in bamboos: understanding reproductive biology, genetic structure, interspecies diversity, and clonal fidelity for conservation and breeding," Biotechnological Advances in Bamboo: The “Green Gold” on the Earth, pp. 33-62, 2021.
20. F. A. Dar, N. U. Mushtaq, S. Saleem, R. U. Rehman, T. U. H. Dar, and K. R. Hakeem, "Role of epigenetics in modulating phenotypic plasticity against abiotic stresses in plants," International journal of genomics, vol. 2022, no. 1, p. 1092894, 2022.
21. L. Siebler, "Identifying novel regulators of heat stress memory in Arabidopsis thaliana," Universität Potsdam, 2024.
22. [2M. Muhammad Aslam et al., "Mechanisms of abscisic acid-mediated drought stress responses in plants," International journal of molecular sciences, vol. 23, no. 3, p. 1084, 2022.
23. I. Amin, S. Rasool, M. A. Mir, W. Wani, K. Z. Masoodi, and P. Ahmad, "Ion homeostasis for salinity tolerance in plants: A molecular approach," Physiologia Plantarum, vol. 171, no. 4, pp. 578-594, 2021.
24. S. Khan, R. Jabeen, F. Deeba, U. Waheed, P. Khanum, and N. Iqbal, "Heat shock proteins: classification, functions and expressions in plants during environmental stresses," Journal of Bioresource Management, vol. 8, no. 2, p. 9, 2021.
25. P. Sharma et al., "The role of key transcription factors for cold tolerance in plants," in Transcription factors for abiotic stress tolerance in plants: Elsevier, 2020, pp. 123-152.
26. A. Noman et al., "Plant hypersensitive response vs pathogen ingression: death of few gives life to others," Microbial pathogenesis, vol. 145, p. 104224, 2020.
27. S. Abbas, M. T. Javed, Q. Ali, M. Azeem, and S. Ali, "Nutrient deficiency stress and relation with plant growth and development," in Engineering tolerance in crop plants against abiotic stress: CRC Press, 2021, pp. 239-262.
28. P. Garcia-Caparros et al., "Oxidative stress and antioxidant metabolism under adverse environmental conditions: a review," The Botanical Review, vol. 87, pp. 421-466, 2021.
29. Y. N. Chang, C. Zhu, J. Jiang, H. Zhang, J. K. Zhu, and C. G. Duan, "Epigenetic regulation in plant abiotic stress responses," Journal of integrative plant biology, vol. 62, no. 5, pp. 563-580, 2020.
30. P. Jogam, D. Sandhya, A. Alok, V. Peddaboina, V. R. Allini, and B. Zhang, "A review on CRISPR/Cas-based epigenetic regulation in plants," International Journal of Biological Macromolecules, vol. 219, pp. 1261-1271, 2022.
31. Z. Akhter et al., "In response to abiotic stress, DNA methylation confers epigenetic changes in plants," Plants, vol. 10, no. 6, p. 1096, 2021.
32. M. Ramakrishnan et al., "Epigenetic stress memory: A new approach to study cold and heat stress responses in plants," Frontiers in plant science, vol. 13, p. 1075279, 2022.
33. C. Kaya, F. Uğurlar, and I.-D. S. Adamakis, "Epigenetic Modifications of Hormonal Signaling Pathways in Plant Drought Response and Tolerance for Sustainable Food Security," International Journal of Molecular Sciences, vol. 25, no. 15, p. 8229, 2024.
34. J. Hu, T. Xu, and H. Kang, "Crosstalk between RNA m6A modification and epigenetic factors for gene regulation in plants," Plant Communications, 2024.
35. K. Tonosaki, R. Fujimoto, E. S. Dennis, V. Raboy, and K. Osabe, "Will epigenetics be a key player in crop breeding?," Frontiers in plant science, vol. 13, p. 958350, 2022.